Platform
RobotToolsSoftwareEcosystem
Self-Driving LabsApplicationsCustomersBlogCompany
Talk to our applications team
Talk to our team

Automated protein purification

The Trilobot fully automates protein purification, from cell lysis through elution.

Talk to our applications team

Scroll to discover

Automating protein purification on Trilobots

Trilobio supports bead-based and column-based protein purifications. While a manual purification run takes roughly two hours, on a single Trilobot, that same run can be fully automated and process 800+ samples a day. Grow your Trilobot fleet, and that number scales past 3,000+ samples a day. Whatever your process looks like, the Trilobio platform is built with flexibility to support it.

A protein purification workflow

Protein purification that scales with your lab

Whether you're purifying a handful of samples or scaling up to thousands, Trilobio grows with your lab and supports a range of techniques.

One Trilobot Two Trilobots Three Trilobots
Best for Labs getting into automation for the first time Labs seeking high walkaway time for protein purification Labs optimizing for high-throughput operations
What it automates ~100% of your protein purification workflow ~100% of your protein purification and QC workflow ~100% of your protein purification and QC workflow
Integrated equipment None 1-2 frames with multiple instruments 1-2 frames with multiple instruments
Throughput 800+ samples/day 1600+ samples/day 3000+ samples/day
Walkaway time* 2 hours 2+ hours 2+ hours
Learn More
Learn More
Learn More
*Based on a 2-hour workflow

At $25k/year, the Trilobot pays for itself

Traditional lab automation systems can run into six figures. Learn how you can automate protein purification in your lab at a fraction of the cost.

Talk to our applications team

What is protein purification?

Protein purification is the process of isolating a target protein from a complex mixture using its size, charge, or binding affinity to separate it from everything else. The workflow moves through five steps: lysing cells, binding the target protein to magnetic beads or a column matrix, washing and treating (sometimes repeated), eluting, and running QC to confirm purity and concentration. Biologists rely on this process to move from a crude cell lysate to a protein pure enough for downstream analysis or use in a larger workflow.

Challenges

Challenges of manual protein purification

Waiting Between Steps

Between timed incubations, washes, and spin steps, there's plenty of downtime—but you still can't leave the bench. You're present for the whole run, productive for only part of it.

Equipment Babysitting

Multi-step prep requires constant attention across timed incubations, reagent additions, and plate transfers, keeping a technician tethered to the bench for most of the run.

Low Throughput

Preparing samples manually can consume an entire day of technician time.

‍

Poor Sample-to-Sample Consistency

Variability between technicians and across runs adds noise to your data.

Opportunity Cost

Sample prep isn’t where the innovation happens, but it's often where scientists spend their time.

High Cost Per Run

When a run fails, you're not just repeating bench work—you're re-spending on consumables, tracking down samples, and re-running analysis.

High Error Rate

Even small volume errors can skew data, introduce artifacts, or invalidate samples.

benefits

Benefits of automated protein purification

Built-In Reliability

Consistent liquid handling at every step means data quality reflects your biology, not variability introduced at the bench.

Full Walkaway

Load your samples and walk away. Trilobot runs multi-step protocols unattended—no babysitting required.

More Samples, Less Time

The Trilobot runs unattended through multi-step protocols, reducing hands-on time across high-volume sample preps.

Run-to-Run Reproducibility

Every sample follows the same protocol to the same specification—no operator variation between technicians or across runs.

End-to-End on One Platform

More of your workflow runs on one platform, so you spend less time managing instrument handoffs and more time on the science.

Flexible by Design

Swap tools, scale volumes, change formats—the Trilobot adapts to your workflow, not the other way around.

Throughput That Keeps Up

 As capacity needs grow, Trilobot scales with them without the prep becoming the bottleneck.

Starts at $25k/year

Full lab automation starting at $25k/year—less than most labs spend on a single liquid handler.

More Data Points Per Plate

Because the system is integratable with your assay setup, every well can run a different condition instead of duplicating one, giving you more usable data out of each plate.

Lower Contamination Risk

Every Trilobiot is enclosed and HEPA-filtered, keeping your samples sterile from start to finish.

Ready to automate protein purification in your lab?

Tell us about your purification workflow, and we'll show you exactly how the Trilobot fits in.
Talk to our applications team
Close-up of a black mechanical robotic arm component against a dark background.

Frequently asked
questions

Explore how protein purification automation works, what makes it different with the Trilobot, and how Trilobio transforms everyday biology workflows.

Talk to our team
How much does it cost to automate protein purification?

Automating protein purification starts at $25k/year with Trilobio.

How does protein purification work on Trilobots?

The Trilobot fully automates the protein purification workflow, including lysing cells, binding your target protein to magnetic beads or a column matrix, washing and treating (repeating as many times as your protocol calls for), and eluting. QC can be orchestrated through integrated instruments.

What protein purification methods and consumables does Trilobio support?

Trilobio supports magnetic bead-based binding with an on-deck magnet and column-based binding with dedicated column tips. You can easily define new labware with Trilobio OS.

Do I need to know how to code to automate protein purification?

No. Protocols are designed in Trilobio OS using biology-level language. Our team also provides onboarding support to get your specific purification protocol running quickly.

How does the Trilobot compare to other protein purification automation systems?

Most protein purification automation systems run into the six figures. The Trilobot starts at $25k/year and is built for ease and flexibility.

Powerful and reliable.
Full lab automation
you can afford.
Robot
Tools
Software
Ecosystem
Customers
Self-Driving Labs
Blog
Company
Talk to our applications team

By providing this information, you agree to be kept informed about Trilobio products and services.

Thank you! Your submission has been received!
Oops! Something went wrong while submitting the form.
Get the latest research insights, product updates, and application tips.
Privacy Policy
Terms of Service
© 2026 Trilobio. All Rights Reserved.
Made by tonik